Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Erik Alm; Eeva K. Broberg; Thomas Connor; Emma B. Hodcroft; Andrey B. Komissarov; Sebastian Maurer-Stroh; Angeliki Melidou; Richard A. Neher; Áine O'Toole; Dmitriy Pereyaslov; Niko Beerenwinkel; Susana Posada-Céspedes; Kim Philipp Jablonski; Pedro Falé Ferreira; Ivan Topolsky; Tatjana Avšič-Županc; Miša Korva; Mario Poljak; Samo Zakotnik; Tomaž Mark Zorec; Karoline Bragstad; Olav Hungnes; Kathrine Stene-Johansen; Chantal Reusken; Adam Meijer; Harry Vennema; Lidia Ruiz-Roldán; María Alma Bracho; Neris García-González; Álvaro Chiner-Oms; Irving Cancino-Muñoz; Iñaki Comas; Galo A. Goig; Manuela Torres-Puente; Mariana G. López; Llúcia Martínez-Priego; Giuseppe D'Auria; Paula Ruíz-Hueso; Loreto Ferrús-Abad; Griselda de Marco; Inmaculada Galan-Vendrell; Sandra Carbó-Ramirez; Paula Ruiz-Rodriguez; Mireia Coscollá; Katerina Polackova; Lenka Kramna; Ondrej Cinek; Jan Richter; George Krashias; Jonathan Ball

doi:10.2807/1560-7917.es.2020.25.32.2001410

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Erik Alm
, Eeva K. Broberg
, Thomas Connor
, Emma B. Hodcroft
, Andrey B. Komissarov
, Sebastian Maurer-Stroh
, Angeliki Melidou
, Richard A. Neher
, Áine O'Toole
, Dmitriy Pereyaslov
, Niko Beerenwinkel
, Susana Posada-Céspedes
, Kim Philipp Jablonski
, Pedro Falé Ferreira
, Ivan Topolsky
, Tatjana Avšič-Županc
, Miša Korva
, Mario Poljak
, Samo Zakotnik
, Tomaž Mark Zorec

Karoline Bragstad, Olav Hungnes, Kathrine Stene-Johansen, Chantal Reusken, Adam Meijer, Harry Vennema, Lidia Ruiz-Roldán, María Alma Bracho, Neris García-González, Álvaro Chiner-Oms, Irving Cancino-Muñoz, Iñaki Comas, Galo A. Goig, Manuela Torres-Puente, Mariana G. López, Llúcia Martínez-Priego, Giuseppe D'Auria, Paula Ruíz-Hueso, Loreto Ferrús-Abad, Griselda de Marco, Inmaculada Galan-Vendrell, Sandra Carbó-Ramirez, Paula Ruiz-Rodriguez, Mireia Coscollá, Katerina Polackova, Lenka Kramna, Ondrej Cinek, Jan Richter, George Krashias, Jonathan Ball

Liverpool School of Tropical Medicine

European Centre for Disease Prevention and Control
Public Health Wales
Cardiff University
University of Basel
Smorodintsev Research Institute of Influenza
Agency for Science, Technology and Research, Singapore
National University of Singapore
Ministry of Health, Government of Singapore
Global Initiative on Sharing All Influenza Data (GISAID)
University of Edinburgh
World Health Organization

Research output: Contribution to journal › Article › peer-review

174 Citations (Scopus)

Abstract

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

Original language	English
Article number	2001410
Journal	Eurosurveillance
Volume	25
Issue number	32
DOIs	https://doi.org/10.2807/1560-7917.es.2020.25.32.2001410
Publication status	Published - 1 Jan 2020

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

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Cite this

Alm, E., Broberg, E. K., Connor, T., Hodcroft, E. B., Komissarov, A. B., Maurer-Stroh, S., Melidou, A., Neher, R. A., O'Toole, Á., Pereyaslov, D., Beerenwinkel, N., Posada-Céspedes, S., Jablonski, K. P., Ferreira, P. F., Topolsky, I., Avšič-Županc, T., Korva, M., Poljak, M., Zakotnik, S., ... Ball, J. (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), Article 2001410. https://doi.org/10.2807/1560-7917.es.2020.25.32.2001410

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title = "Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020",

abstract = "We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.",

author = "Erik Alm and Broberg, \{Eeva K.\} and Thomas Connor and Hodcroft, \{Emma B.\} and Komissarov, \{Andrey B.\} and Sebastian Maurer-Stroh and Angeliki Melidou and Neher, \{Richard A.\} and {\'A}ine O'Toole and Dmitriy Pereyaslov and Niko Beerenwinkel and Susana Posada-C{\'e}spedes and Jablonski, \{Kim Philipp\} and Ferreira, \{Pedro Fal{\'e}\} and Ivan Topolsky and Tatjana Av{\v s}i{\v c}-{\v Z}upanc and Mi{\v s}a Korva and Mario Poljak and Samo Zakotnik and Zorec, \{Toma{\v z} Mark\} and Karoline Bragstad and Olav Hungnes and Kathrine Stene-Johansen and Chantal Reusken and Adam Meijer and Harry Vennema and Lidia Ruiz-Rold{\'a}n and Bracho, \{Mar{\'i}a Alma\} and Neris Garc{\'i}a-Gonz{\'a}lez and {\'A}lvaro Chiner-Oms and Irving Cancino-Mu{\~n}oz and I{\~n}aki Comas and Goig, \{Galo A.\} and Manuela Torres-Puente and L{\'o}pez, \{Mariana G.\} and Ll{\'u}cia Mart{\'i}nez-Priego and Giuseppe D'Auria and Paula Ru{\'i}z-Hueso and Loreto Ferr{\'u}s-Abad and \{de Marco\}, Griselda and Inmaculada Galan-Vendrell and Sandra Carb{\'o}-Ramirez and Paula Ruiz-Rodriguez and Mireia Coscoll{\'a} and Katerina Polackova and Lenka Kramna and Ondrej Cinek and Jan Richter and George Krashias and Jonathan Ball",

year = "2020",

month = jan,

day = "1",

doi = "10.2807/1560-7917.es.2020.25.32.2001410",

language = "English",

volume = "25",

journal = "Eurosurveillance",

issn = "1025-496X",

publisher = "European Centre for Disease Prevention and Control (ECDC)",

number = "32",

}

Alm, E, Broberg, EK, Connor, T, Hodcroft, EB, Komissarov, AB, Maurer-Stroh, S, Melidou, A, Neher, RA, O'Toole, Á, Pereyaslov, D, Beerenwinkel, N, Posada-Céspedes, S, Jablonski, KP, Ferreira, PF, Topolsky, I, Avšič-Županc, T, Korva, M, Poljak, M, Zakotnik, S, Zorec, TM, Bragstad, K, Hungnes, O, Stene-Johansen, K, Reusken, C, Meijer, A, Vennema, H, Ruiz-Roldán, L, Bracho, MA, García-González, N, Chiner-Oms, Á, Cancino-Muñoz, I, Comas, I, Goig, GA, Torres-Puente, M, López, MG, Martínez-Priego, L, D'Auria, G, Ruíz-Hueso, P, Ferrús-Abad, L, de Marco, G, Galan-Vendrell, I, Carbó-Ramirez, S, Ruiz-Rodriguez, P, Coscollá, M, Polackova, K, Kramna, L, Cinek, O, Richter, J, Krashias, G & Ball, J 2020, 'Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020', Eurosurveillance, vol. 25, no. 32, 2001410. https://doi.org/10.2807/1560-7917.es.2020.25.32.2001410

TY - JOUR

T1 - Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

AU - Alm, Erik

AU - Broberg, Eeva K.

AU - Connor, Thomas

AU - Hodcroft, Emma B.

AU - Komissarov, Andrey B.

AU - Maurer-Stroh, Sebastian

AU - Melidou, Angeliki

AU - Neher, Richard A.

AU - O'Toole, Áine

AU - Pereyaslov, Dmitriy

AU - Beerenwinkel, Niko

AU - Posada-Céspedes, Susana

AU - Jablonski, Kim Philipp

AU - Ferreira, Pedro Falé

AU - Topolsky, Ivan

AU - Avšič-Županc, Tatjana

AU - Korva, Miša

AU - Poljak, Mario

AU - Zakotnik, Samo

AU - Zorec, Tomaž Mark

AU - Bragstad, Karoline

AU - Hungnes, Olav

AU - Stene-Johansen, Kathrine

AU - Reusken, Chantal

AU - Meijer, Adam

AU - Vennema, Harry

AU - Ruiz-Roldán, Lidia

AU - Bracho, María Alma

AU - García-González, Neris

AU - Chiner-Oms, Álvaro

AU - Cancino-Muñoz, Irving

AU - Comas, Iñaki

AU - Goig, Galo A.

AU - Torres-Puente, Manuela

AU - López, Mariana G.

AU - Martínez-Priego, Llúcia

AU - D'Auria, Giuseppe

AU - Ruíz-Hueso, Paula

AU - Ferrús-Abad, Loreto

AU - de Marco, Griselda

AU - Galan-Vendrell, Inmaculada

AU - Carbó-Ramirez, Sandra

AU - Ruiz-Rodriguez, Paula

AU - Coscollá, Mireia

AU - Polackova, Katerina

AU - Kramna, Lenka

AU - Cinek, Ondrej

AU - Richter, Jan

AU - Krashias, George

AU - Ball, Jonathan

PY - 2020/1/1

Y1 - 2020/1/1

N2 - We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

AB - We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

U2 - 10.2807/1560-7917.es.2020.25.32.2001410

DO - 10.2807/1560-7917.es.2020.25.32.2001410

M3 - Article

SN - 1025-496X

VL - 25

JO - Eurosurveillance

JF - Eurosurveillance

IS - 32

M1 - 2001410

ER -

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Abstract

UN SDGs

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