Biopython: freely available Python tools for computational molecular biology and bioinformatics

P. J. A. Cock; Tiago Rodrigues Antao; J. T. Chang; B. A. Chapman; C. J. Cox; A. Dalke; I. Friedberg; T. Hamelryck; F. Kauff; B. Wilczynski; M. J. L. de Hoon

doi:10.1093/bioinformatics/btp163

Biopython: freely available Python tools for computational molecular biology and bioinformatics

P. J. A. Cock, Tiago Rodrigues Antao, J. T. Chang, B. A. Chapman, C. J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski, M. J. L. de Hoon

Liverpool School of Tropical Medicine

Liverpool School of Tropical Medicine

Research output: Contribution to journal › Article › peer-review

3789 Citations (Scopus)

Abstract

The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence. le formats and multiple sequence alignments, dealing with 3D macromolecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning.

Original language	English
Pages (from-to)	1422-1423
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	11
DOIs	https://doi.org/10.1093/bioinformatics/btp163
Publication status	Published - 20 Mar 2009

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title = "Biopython: freely available Python tools for computational molecular biology and bioinformatics",

abstract = "The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence. le formats and multiple sequence alignments, dealing with 3D macromolecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning.",

author = "Cock, \{P. J. A.\} and \{Rodrigues Antao\}, Tiago and Chang, \{J. T.\} and Chapman, \{B. A.\} and Cox, \{C. J.\} and A. Dalke and I. Friedberg and T. Hamelryck and F. Kauff and B. Wilczynski and \{de Hoon\}, \{M. J. L.\}",

year = "2009",

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doi = "10.1093/bioinformatics/btp163",

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AU - Cock, P. J. A.

AU - Rodrigues Antao, Tiago

AU - Chang, J. T.

AU - Chapman, B. A.

AU - Cox, C. J.

AU - Dalke, A.

AU - Friedberg, I.

AU - Hamelryck, T.

AU - Kauff, F.

AU - Wilczynski, B.

AU - de Hoon, M. J. L.

PY - 2009/3/20

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AB - The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence. le formats and multiple sequence alignments, dealing with 3D macromolecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning.

U2 - 10.1093/bioinformatics/btp163

DO - 10.1093/bioinformatics/btp163

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JO - Bioinformatics

JF - Bioinformatics

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Biopython: freely available Python tools for computational molecular biology and bioinformatics

Abstract

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